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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0003Get Sequence
Gene Name C0299
Position 1229852.....1229930
Length 79 bp
Strand forward
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;Traceable author statement to experimental support;
Source regulonDB

Genome position

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "C0299 is a small RNA of approximately 78 nt in length (Hershberg R,2003). Review: (Hershberg R,2003)."
 

References

Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_773_1228500_1229989_fwd_st
more

External Database Connections

ECK120002609
EB4509
G0-8898
RF00119


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw