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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0004Get Sequence
Gene Name C0343
Position 1407387.....1407461
Length 75 bp
Strand forward
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Traceable author statement to experimental support;Inferred from direct assay;
Source regulonDB

Genome position

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "C0343 is a small RNA of approximately 74 nt in length (Hershberg R,2003). Review: (Hershberg R,2003)."
 

References

Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_885_1407058_1407534_fwd_st
more

External Database Connections

ECK120002611
EB4511
G0-8900
RF00120


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw