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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0005Get Sequence
Gene Name C0362
Position 1550025.....1550410
Length 386 bp
Strand forward
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;Traceable author statement to experimental support;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "C0362 is a small RNA of approximately 385 nt in length (Hershberg R,2003). Review: (Hershberg R,2003)."
 

References

Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Computational Records


Gene NameStartEndStrand
NC043 1550245 1550428 forward

score Promoter score:51.46;Terminator score:-8.03;Z score-2.53
Note GenBank annotations:C0362
Methods program pftools2.2 to identify the putative sigma70 promoter; RNAMotif software to identify putative rho-independent terminators; Gapped Markov Model Index.
Species Escherichia coli K12 MG1655
Sequence Get Sequence
PMID PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_973_1550016_1554648_fwd_f_st
more

External Database Connections

ECK120002613
EB4513
G0-8902


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw