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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0007Get Sequence
Gene Name C0614
Position 2651474.....2651560
Length 87 bp
Strand reverse
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;Traceable author statement to experimental support;
Source regulonDB

Genome position

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "C0614 is a small RNA of approximately 86 nt in length (Hershberg R,2003). Review: (Hershberg R,2003)."
 

References

Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_1645_2650308_2652176_rev_st
more

External Database Connections

ECK120002618
EB4524
G0-8907


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw