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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0011Get Sequence
Gene Name csrC
Synonyms ECK3858;psrA21;ryiB;tpk2;b4457;IS198;sraK;
Position 4049059.....4049303
Length 245 bp
Strand forward
Gene Class RNA inhibitor of CsrA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


    "CsrC RNA binds to and probably sequesters CsrA, thereby inhibiting CsrA activity (Weilbacher T,2003). SraK is reported to be a small RNA of approximately 245 nt in length (Argaman L,2001), Tpk2 is reported to be a small RNA of 250 nt in length (Rivas E,2001), and RyiB/CsrC is reported to be a small RNA of approximately 270 nt in length (Wassarman KM,2001). SraK and RyiB are reported to be the same RNA (Gottesman S,2001). The IS198 gene is reported (by (Chen S,2002)) to encode a 13 residue peptide but also to be the same as the gene encoding .....

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References

Weilbacher T, Suzuki K, Dubey AK, Wang X, Gudapaty S, Morozov I, Baker CS, Georgellis D, Babitzke P, and Romeo T (2003) "A novel sRNA component of the carbon storage regulatory system of Escherichia coli." Mol Microbiol 48 (3)  PubMed
Massé E, Majdalani N, and Gottesman S (2003) "Regulatory roles for small RNAs in bacteria." Curr Opin Microbiol 6 (2)  PubMed
Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, and Wagner EG (2003) "RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria." Nucleic Acids Res 31 (22)  PubMed
Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, and Altuvia S (2001) "Novel small RNA-encoding genes in the intergenic regions of Escherichia coli." Curr Biol 11 (12)  PubMed
Wassarman KM, Repoila F, Rosenow C, Storz G, and Gottesman S (2001) "Identification of novel small RNAs using comparative genomics and microarrays." Genes Dev 15 (13)  PubMed
more..

Comparative Genomics by UCSC Genome Browser

Network Visualization

Regulators/sRNAs


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sRNAs/Targets


External Database Connections

ECK120002586
EB4540
2847776
ABE-0047275
JWR0214
EG31134
G0-8874
b4457
RF00084


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw