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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0016Get Sequence
Gene Name IS128
Position 2651537.....2651745
Length 209 bp
Strand forward
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position

NO conserved alignment determine the structure

Descriptions


            "IS128 encodes a small RNA of approximately 90-95 nt in length (Chen S,2002). A putative predicted small RNA, IS129, might be transcribed from the opposite strand in the same region as IS128 (Chen S,2002). IS128 may be identical to RyfA (Chen S,2002). IS128 RNA is transcribed from the region between the sseA and sseB genes; the nucleotide position given encompasses this entire area (Chen S,2002. Hershberg R,2003). Review: (Hershberg R,2003)."
 

References

Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, and Blyn LB () "A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome." Biosystems 65 (2-3)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_1646_2651360_2661461_fwd_f_st
more

External Database Connections

ECK120002619
EB4525
5594986
G0-8908
RF00125


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw