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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0017Get Sequence
Gene Name isrA
Synonyms ECK1336;IS061;b4426;
Position 1403676.....1403833
Length 158 bp
Strand reverse
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "IS061 encodes small RNA species of approximately 85-90 and 130-140 nt in length (Chen S,2002). IS061 RNA is transcribed from the region between the abgR and ydaL genes; the nucleotide position given encompasses this entire area (Chen S,2002. Hershberg R,2003). Review: (Hershberg R,2003)."
 

References

Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, and Blyn LB () "A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome." Biosystems 65 (2-3)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_881_1402605_1404586_rev_st
more

External Database Connections

ECK120002610
EB4510
2847751
ABE-0047247
JWR0233
EG31143
G0-8899
b4426
RF00115


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw