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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0018Get Sequence
Gene Name isrB
Synonyms ECK1902;IS092;b4434;
Position 1985863.....1986022
Length 160 bp
Strand reverse
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "IS092 encodes a small RNA of approximately 150-160 nt in length (Chen S,2002). IS092 RNA is transcribed from the region between the yecJ and yecR genes; the nucleotide position given encompasses this entire area (Chen S,2002. Hershberg R,2003). Review: (Hershberg R,2003)."
 

References

Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, and Blyn LB () "A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome." Biosystems 65 (2-3)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_1266_1984152_1987273_rev_st
more

External Database Connections

ECK120002615
EB4518
2847689
ABE-0047254
JWR0239
EG31148
G0-8904
b4434


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw