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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0019Get Sequence
Gene Name isrC
Synonyms ECK1992;IS102;b4435;
Position 2069339.....2069542
Length 204 bp
Strand forward
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "IS102 encodes a small RNA of approximately 180-190 nt in length (Chen S,2002). IS102 RNA is transcribed from the region between the yeeP and flu genes; the nucleotide position given encompasses this entire area (Chen S,2002. Hershberg R,2003). Review: (Hershberg R,2003)."
 

References

Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, and Blyn LB () "A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome." Biosystems 65 (2-3)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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External Database Connections

ECK120002616
EB4519
2847691
ABE-0047255
JWR0240
EG31150
G0-8905
b4435
RF00124


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw