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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0026Get Sequence
Gene Name psrD
Synonyms ECK1073;sraB;b4418;psrA4;pke20;
Position 1145812.....1145980
Length 169 bp
Strand forward
Gene Class PsrD small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "SraB is a small RNA of approximately 149-168 nt in length (Argaman L,2001). SraB RNA has similarity to sequences from Salmonella and Klebsiella pneumoniae (Argaman L,2001). Sra: small RNA (Argaman L,2001). PsrA: predicted small RNA (Argaman L,2001). Regulation has been described (Argaman L,2001). Review: (Gottesman S,2001)."
 

References

Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, and Altuvia S (2001) "Novel small RNA-encoding genes in the intergenic regions of Escherichia coli." Curr Biol 11 (12)  PubMed
Gottesman S, Storz G, Rosenow C, Majdalani N, Repoila F, and Wassarman KM (2001) "Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs." Cold Spring Harb Symp Quant Biol 66 ()  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_720_1145123_1146016_fwd_st
more

External Database Connections

ECK120002575
EB4507
2847755
ABE-0047242
JWR0228
EG31138
G0-8862
b4418
RF00077


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw