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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0031Get Sequence
Gene Name rdlC
Synonyms ECK1209;b4424;
Position 1269616.....1269683
Length 68 bp
Strand forward
Gene Class "antisense RNA, trans-acting regulator of ldrC"
Species Escherichia coli K12 MG1655
Evidence Human inference of function from sequence;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "rdlC is one of a set of four rdl genes, one of which has been shown to code for the antisense regulatory RNA part of a toxin-antitoxin pair (Kawano M,2002). All of the rdl genes are associated with a matched ldr gene (Kawano M,2002)."
 

References

Kawano M, Oshima T, Kasai H, and Mori H (2002) "Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli." Mol Microbiol 45 (2)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNAs/Targets


sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_798_1268243_1271341_fwd_f_st
more

External Database Connections

ECK120002660
EB4544
2847680
ABE-0047245
JWR0231
EG31141
G0-9608
b4424


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw