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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0036Get Sequence
Gene Name rybA
Synonyms ECK0806;b4416;
Position 852175.....852263
Length 89 bp
Strand reverse
Gene Class RybA small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "RybA is a small RNA of approximately 205 nt in length (larger species have also been detected) (Wassarman KM,2001). RybA is transcribed from the region between the ybiP and ybiQ genes; the exact nucleotide position is not reported (Hershberg R,2003). Ryx: RNA of unknown function at X position ARRAY(0x438f44) in the genome (Wassarman KM,2001). Regulation has been described (Wassarman KM,2001). Reviews: (Gottesman S,2001. Hershberg R,2003)."
 

References

Wassarman KM, Repoila F, Rosenow C, Storz G, and Gottesman S (2001) "Identification of novel small RNAs using comparative genomics and microarrays." Genes Dev 15 (13)  PubMed
Gottesman S, Storz G, Rosenow C, Majdalani N, Repoila F, and Wassarman KM (2001) "Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs." Cold Spring Harb Symp Quant Biol 66 ()  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_542_851821_854046_rev_st
more

External Database Connections

ECK120002592
EB4505
2847681
ABE-0047240
JWR0226
EG31136
G0-8881
b4416


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw