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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0042Get Sequence
Gene Name ryeC
Synonyms ECK2068;tp11;b4436;QUAD1a;
Position 2151333.....2151475
Length 143 bp
Strand forward
Gene Class RyeC small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position

NO conserved alignment determine the structure

Descriptions


            "RyeC and RyeD are small RNAs of approximately 107-143 nt and 102-137 nt in length, respectively, which are encoded within the same inter-ORF region of the genome (between the yegL and yegM genes) (Wassarman KM,2001). RyeC and RyeD contain QUAD repeats (Wassarman KM,2001). Ryx: RNA of unknown function at X position ARRAY(0x44e348) in the genome (Wassarman KM,2001). Regulation has been described (Wassarman KM,2001). Reviews: (Gottesman S,2001. Hershberg R,2003)."
 

References

Wassarman KM, Repoila F, Rosenow C, Storz G, and Gottesman S (2001) "Identification of novel small RNAs using comparative genomics and microarrays." Genes Dev 15 (13)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed
Gottesman S, Storz G, Rosenow C, Majdalani N, Repoila F, and Wassarman KM (2001) "Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs." Cold Spring Harb Symp Quant Biol 66 ()  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_1368_2149669_2151890_fwd_st
more

External Database Connections

ECK120002595
EB4520
2847673
ABE-0047256
JWR0241
EG31151
G0-8884
b4436


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw