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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0044Get Sequence
Gene Name ryeE
Synonyms ECK2078;b4438;
Position 2165136.....2165221
Length 86 bp
Strand forward
Gene Class small RNA that interacts with Hfq
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


    "RyeE is a small RNA reported to be approximately 86 nt (Wassarman KM,2001) or 47 nt (Hershberg R,2003) in length. RyeE is transcribed from the region between the yegQ and orrK genes; the exact nucleotide position is not reported (Hershberg R,2003). An interaction between RyeE RNA and Hfq protein has been detected (Wassarman KM,2001). Ryx: RNA of unknown function at X position ARRAY(0x4b3510) in the genome (Wassarman KM,2001). High-copy expression causes decreased expression of rpoS at stationary phase in LB (Wassarman KM,2001). Regulation.....

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References

Wassarman KM, Repoila F, Rosenow C, Storz G, and Gottesman S (2001) "Identification of novel small RNAs using comparative genomics and microarrays." Genes Dev 15 (13)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed
Gottesman S, Storz G, Rosenow C, Majdalani N, Repoila F, and Wassarman KM (2001) "Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs." Cold Spring Harb Symp Quant Biol 66 ()  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

Regulators/sRNAs


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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_1372_2165052_2166733_fwd_st
more

External Database Connections

ECK120002589
EB4522
2847769
ABE-0047258
JWR0243
EG31153
G0-8878
b4438
RF00112


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw