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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0046Get Sequence
Gene Name ryfB
Synonyms b4607;ECK4416;
Position 2698081.....2698399
Length 319 bp
Strand reverse
Gene Class RyfB small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "RyfB was identified in a cloning-based screen for small RNAs. RyfB is expressed during exponential growth (Kawano M,2005)."
 

References

Kawano M, Reynolds AA, Miranda-Rios J, and Storz G (2005) "Detection of 5`- and 3`-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli." Nucleic Acids Res 33 (3)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_1670_2696508_2698637_rev_st
more

External Database Connections

ECK120030081
5061517
EG31177
G0-10597


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw