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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0047Get Sequence
Gene Name ryfC
Synonyms b4608;ECK4417;
Position 2698542.....2698618
Length 77 bp
Strand forward
Gene Class RyfC small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "RyfC was identified in a cloning-based screen for small RNAs. RyfC is most highly expressed under stationary phase conditions in minimal medium (Kawano M,2005)."
 

References

Kawano M, Reynolds AA, Miranda-Rios J, and Storz G (2005) "Detection of 5`- and 3`-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli." Nucleic Acids Res 33 (3)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_1672_2697944_2708439_fwd_st
more

External Database Connections

ECK120030082
5061518
EG31178
G0-10598


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw