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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0055Get Sequence
Gene Name ryjB
Synonyms b4624;ECK4431;
Position 4526000.....4526089
Length 90 bp
Strand forward
Gene Class RyjB small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "RyjB was detected by co-immunoprecipitation with Hfq (Zhang A,2003) and in a cloning-based screen for small RNAs (Kawano M,2005). RyjB is expressed under all tested growth conditions (Kawano M,2005)."
 

References

Zhang A, Wassarman KM, Rosenow C, Tjaden BC, Storz G, and Gottesman S (2003) "Global analysis of small RNA and mRNA targets of Hfq." Mol Microbiol 50 (4)  PubMed
Kawano M, Reynolds AA, Miranda-Rios J, and Storz G (2005) "Detection of 5`- and 3`-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli." Nucleic Acids Res 33 (3)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_2805_4516371_4532582_fwd_st
more

External Database Connections

ECK120030092
5061532
EG31181
G0-10609


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw