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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0060Get Sequence
Gene Name sraA
Synonyms psrA3;t15;
Position 457952.....458008
Length 57 bp
Strand reverse
Gene Class SraA small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "SraA is a small RNA of approximately 120 nt in length (Argaman L,2001). SraA RNA has similarity to sequences from Salmonella and Klebsiella pneumoniae (Argaman L,2001). Sra: small RNA (Argaman L,2001). PsrA: predicted small RNA (Argaman L,2001). Regulation has been described (Argaman L,2001). Reviews: (Gottesman S,2001. Hershberg R,2003). "
 

References

Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, and Altuvia S (2001) "Novel small RNA-encoding genes in the intergenic regions of Escherichia coli." Curr Biol 11 (12)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed
Gottesman S, Storz G, Rosenow C, Majdalani N, Repoila F, and Wassarman KM (2001) "Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs." Cold Spring Harb Symp Quant Biol 66 ()  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_290_453494_464075_rev_st
more

External Database Connections

ECK120002574
EB4504
G0-8861


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw