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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0061Get Sequence
Gene Name sroA
Synonyms tpe79;
Position 75516.....75608
Length 93 bp
Strand reverse
Gene Class SroA small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "SroA is encoded in the intergenic region between thiB and yabN and overlaps with a riboswitch element in the 5' UTR of thiB. SroA may be generated by attenuation of thiBPQ transcription in rapidly growing cells. The half life of SroA in exponentially growing cells is 4 minutes (Vogel J,2003). The sequence of SroA is conserved between E. coli and Salmonella species (Vogel J,2003)."
 

References

Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, and Wagner EG (2003) "RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria." Nucleic Acids Res 31 (22)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_47_75481_75643_rev_st
more

External Database Connections

ECK120002641
G0-9381


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw