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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0062Get Sequence
Gene Name sroB
Synonyms b4585;ECK4396;
Position 506428.....506509
Length 82 bp
Strand forward
Gene Class SroB small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "SroB is encoded in the intergenic region between the ORFs ybaK and ybaP. Expression of SroB is increased in stationary phase, and the half life is 32 minutes (Vogel J,2003). The sequence of SroB is conserved in Salmonella species (Vogel J,2003)."
 

References

Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, and Wagner EG (2003) "RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria." Nucleic Acids Res 31 (22)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_329_505791_507387_fwd_st
more

External Database Connections

ECK120002642
5061500
ABE-0285117
EG31175
G0-9382
RF00368


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw