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sRNA Annotations

2nd structure
sRNAG0064Get Sequence
Gene Name sroD
Synonyms p24;
Position 1886041.....1886126
Length 86 bp
Strand reverse
Gene Class SroD small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
Get alignment sequences


            "SroD overlaps the 3' region of fadD and extends into the promoter of the downstream rnd gene. SroD may be a processing product of the fadD mRNA. SroD is expressed in a narrow window at the onset of stationary phase; the half life of SroD is 8 minutes (Vogel J,2003)."


Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, and Wagner EG (2003) "RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria." Nucleic Acids Res 31 (22)  PubMed

Comparative Genomics by UCSC Genome Browser

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External Database Connections


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw