About Search Browse Statistics Tutorial Downloads


sRNA Annotations

2nd structure
(RNAfold)
sRNAG0064Get Sequence
Gene Name sroD
Synonyms p24;
Position 1886041.....1886126
Length 86 bp
Strand reverse
Gene Class SroD small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "SroD overlaps the 3' region of fadD and extends into the promoter of the downstream rnd gene. SroD may be a processing product of the fadD mRNA. SroD is expressed in a narrow window at the onset of stationary phase; the half life of SroD is 8 minutes (Vogel J,2003)."
 

References

Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, and Wagner EG (2003) "RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria." Nucleic Acids Res 31 (22)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

alt="Your browser understands the <APPLET> tag but isn't running the applet, for some reason." Your browser is completely ignoring the <APPLET> tag! Requires Java Web Start, which is automatically installed when you install JRE/JDK with version 1.4.2 above.

External Database Connections

ECK120002644
5590980
G0-9384
RF00370


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw