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sRNA Annotations

2nd structure
sRNAG0065Get Sequence
Gene Name sroE
Synonyms k20;
Position 2638617.....2638708
Length 92 bp
Strand reverse
Gene Class SroE small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
Get alignment sequences


            "SroE is processed from the upstream gpcE gene and extends into the promoter region of the downstream hisS gene. The half life of SroE is 32 minutes (Vogel J,2003). The sequence of SroE is conserved between E. coli and Salmonella species (Vogel J,2003)."


Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, and Wagner EG (2003) "RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria." Nucleic Acids Res 31 (22)  PubMed

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External Database Connections


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw