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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0065Get Sequence
Gene Name sroE
Synonyms k20;
Position 2638617.....2638708
Length 92 bp
Strand reverse
Gene Class SroE small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "SroE is processed from the upstream gpcE gene and extends into the promoter region of the downstream hisS gene. The half life of SroE is 32 minutes (Vogel J,2003). The sequence of SroE is conserved between E. coli and Salmonella species (Vogel J,2003)."
 

References

Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, and Wagner EG (2003) "RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria." Nucleic Acids Res 31 (22)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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External Database Connections

ECK120002645
5591668
G0-9385
RF00371


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw