About Search Browse Statistics Tutorial Downloads


sRNA Annotations

2nd structure
(RNAfold)
sRNAG0066Get Sequence
Gene Name sroG
Synonyms HB_456/7;
Position 3182592.....3182740
Length 149 bp
Strand reverse
Gene Class SroG small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "SroG is generated from the 5' UTR of the ribB gene. It is expressed during exponential phase with a half life of 3 minutes (Vogel J,2003)."
 

References

Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, and Wagner EG (2003) "RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria." Nucleic Acids Res 31 (22)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

alt="Your browser understands the <APPLET> tag but isn't running the applet, for some reason." Your browser is completely ignoring the <APPLET> tag! Requires Java Web Start, which is automatically installed when you install JRE/JDK with version 1.4.2 above.

sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_1977_3182483_3189754_rev_f_st
more

External Database Connections

ECK120002646
5594857
G0-9387


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw