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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0069Get Sequence
Gene Name tff
Synonyms ECK0167;b4414;t44;
Position 189712.....189847
Length 136 bp
Strand forward
Gene Class T44 small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "T44 is a small RNA of approximately 135 nt in length (Rivas E,2001). The gene position corresponds to that of the predicted site of the gene, which would encode an RNA of 251 nt (Rivas E,2001). Review: (Hershberg R,2003)."
 

References

Rivas E, Klein RJ, Jones TA, and Eddy SR (2001) "Computational identification of noncoding RNAs in E. coli by comparative genomics." Curr Biol 11 (17)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_105_183621_189873_fwd_st
more

External Database Connections

ECK120002606
EB4502
2847773
ABE-0047239
JWR0225
EG31135
G0-8895
b4414
RF00127


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw