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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0070Get Sequence
Gene Name tp2
Position 122697.....122857
Length 161 bp
Strand reverse
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "Tp2 is a small RNA of approximately 120 nt in length, and a 60 nt transcript is also observed (Rivas E,2001). The gene position corresponds to that of the predicted site of the gene, which would encode an RNA of 160 nt (Rivas E,2001). Review: (Hershberg R,2003)."
 

References

Rivas E, Klein RJ, Jones TA, and Eddy SR (2001) "Computational identification of noncoding RNAs in E. coli by comparative genomics." Curr Biol 11 (17)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_67_121552_129406_rev_st
more

External Database Connections

ECK120002605
EB4501
G0-8894


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw