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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0071Get Sequence
Gene Name tpke11
Position 14080.....14168
Length 89 bp
Strand forward
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


            "Tpke11 is a small RNA of approximately 370 nt in length (Rivas E,2001). The gene position corresponds to that of the predicted site of the tpke11 gene, which would encode an RNA of 88 nt (Rivas E,2001). Review: (Hershberg R,2003)."
 

References

Rivas E, Klein RJ, Jones TA, and Eddy SR (2001) "Computational identification of noncoding RNAs in E. coli by comparative genomics." Curr Biol 11 (17)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_13_14080_14167_fwd_st
more

External Database Connections

ECK120002604
EB4500
G0-8893


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw