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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0072Get Sequence
Gene Name tpke70
Position 2494216.....2494651
Length 436 bp
Strand reverse
Gene Class small RNA
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;
Source regulonDB

Genome position Promoter site

NO conserved alignment determine the structure

Descriptions


            "Tpke70 is a small RNA of approximately 40 nt in length (Rivas E,2001). The gene position corresponds to that of the predicted site of the gene, which would encode an RNA of 435 nt (Rivas E,2001). Review: (Hershberg R,2003)."
 

References

Rivas E, Klein RJ, Jones TA, and Eddy SR (2001) "Computational identification of noncoding RNAs in E. coli by comparative genomics." Curr Biol 11 (17)  PubMed
Hershberg R, Altuvia S, and Margalit H (2003) "A survey of small RNA-encoding genes in Escherichia coli." Nucleic Acids Res 31 (7)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_1555_2493313_2495076_rev_st
more

External Database Connections

ECK120002617
EB4523
G0-8906


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw