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sRNA Annotations

2nd structure
(RNAfold)
sRNAG0077Get Sequence
Gene Name glmZ
Synonyms ECK3795;sraJ;b4456;ryiA;k19;psrA20;
Position 3984455.....3984626
Length 172 bp
Strand forward
Gene Class GlmZ small RNA regulator of glmS expression
Species Escherichia coli K12 MG1655
Evidence Inferred from direct assay;Inferred from mutant phenotype;
Source regulonDB

Genome position Promoter site

Structural RNA alignment
(RNALogo)
Get alignment sequences

Descriptions


    "GlmZ is a small RNA involved in posttranscriptional regulation of glmS accumulation in response to the intracellular concentration of glucosamine 6-phosphate (Kalamorz F,2007). An efficient interaction between GlmZ RNA and Hfq protein has been detected (Wassarman KM,2001). GlmZ was detected as a small RNA that appears in two forms, a full-length species of approximately 210 nt and a processed species of approximately 172 nt in length (Wassarman KM,2001. Argaman L,2001). Posttranscriptional processing of GlmZ is dependent on RNase III .....

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References

Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, and Altuvia S (2001) "Novel small RNA-encoding genes in the intergenic regions of Escherichia coli." Curr Biol 11 (12)  PubMed
Gottesman S, Storz G, Rosenow C, Majdalani N, Repoila F, and Wassarman KM (2001) "Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs." Cold Spring Harb Symp Quant Biol 66 ()  PubMed
Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, and Wagner EG (2003) "RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria." Nucleic Acids Res 31 (22)  PubMed
Wassarman KM, Repoila F, Rosenow C, Storz G, and Gottesman S (2001) "Identification of novel small RNAs using comparative genomics and microarrays." Genes Dev 15 (13)  PubMed

Comparative Genomics by UCSC Genome Browser

Network Visualization

Regulators/sRNAs


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sRNA Expression Profiles

TitleF plasmid induced changes in expression levels in E. coli
Citation(s)16432259;16981998;SeriesGSE1154
Samples
1:MG1655_replicate12:MG1655_replicate23:MG1655F_replicate1
4:MG1655F_replicate25:DH5alpha_replicate16:DH5alpha_replicate2
7:DH5alphaF_replicate18:DH5alphaF_replicate2
IG_2454_3981807_3988765_fwd_st
more

External Database Connections

ECK120002585
2847678
ABE-0047274
JWR0257
EG31165
G0-8873
RF00083


Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw