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sRNA Gene|sRNA Regulation|sRNA Targeting

Literatures Records of sRNA Gene

Select sRNA genes and submit to browse sRNA you interest.

sRNA_Name Species Experiment_Type Regulation
micF Escherichia coli   induce
micF Escherichia coli   induce
sgrS Escherichia coli K12 MG1655   induce
sgrS Escherichia coli K12 MG1655   repress
rsmX Pseudomonas fluorescens   induce
rsmY Pseudomonas fluorescens   induce
rsmZ Pseudomonas fluorescens   induce
oxyS Escherichia coli   induce
rprA Escherichia coli   induce
isrJ Salmonella typhimurium nortern blot induce
isrC Salmonella typhimurium nortern blot induce
isrL Salmonella typhimurium nortern blot induce
isrH-1 Salmonella typhimurium nortern blot induce
isrH-2 Salmonella typhimurium nortern blot induce
isrF Salmonella typhimurium nortern blot induce
isrI Salmonella typhimurium nortern blot induce
isrD Salmonella typhimurium nortern blot induce
isrN Salmonella typhimurium nortern blot induce
isrA Salmonella typhimurium nortern blot induce
isrG Salmonella typhimurium nortern blot induce
isrM Salmonella typhimurium nortern blot repress
isrO Salmonella typhimurium nortern blot repress
isrQ Salmonella typhimurium nortern blot repress
isrK Salmonella typhimurium nortern blot induce
isrJ Salmonella typhimurium nortern blot induce
isrP Salmonella typhimurium nortern blot repress
isrE Salmonella typhimurium nortern blot induce
ryhB Salmonella typhimurium nortern blot induce
ryhB Salmonella typhimurium nortern blot induce
isrE Salmonella typhimurium nortern blot induce
isrH Salmonella typhimurium nortern blot induce
dsrA Escherichia coli   induce
dsrA Escherichia coli   induce
micF Escherichia coli   induce
micF Escherichia coli   induce
micF Escherichia coli   induce
micF Escherichia coli   induce
micF Escherichia coli   induce
micF Escherichia coli   induce
micF Escherichia coli   induce
micF Escherichia coli   induce
micF Escherichia coli   induce
micF Escherichia coli   induce
micX Vibrio cholerae nortern blot induce
omrB Escherichia coli nortern blot induce
RybB Escherichia coli nortern blot induce
omrA Escherichia coli nortern blot induce
omrA Escherichia coli nortern blot induce
omrB Escherichia coli nortern blot induce
micF Escherichia coli nortern blot induce
ryhb Escherichia coli nortern blot and microarray induce

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sRNA Gene|sRNA Regulation|sRNA Targeting

Literatrues Records of sRNA Regulation

Select sRNA regulation and submit to browse sRNA you interest.

Regulator_Name sRNA_Name Species Regulation
sgrR sgrS Escherichia coli induce
BarA/UvrY csrB Escherichia coli K12 MG1655 induce
GacS/GacA PrrB Pseudomonas fluorescens F113 induce
GacS/GacA rsmB Erwinia carotovora induce
csrD csrB Escherichia coli degradation
csrD csrC Escherichia coli degradation
rsmC rsmB Erwinia carotovora repress
hexA rsmB Erwinia carotovora repress
csrD csrB Escherichia coli K12 MG1655 degradation
csrD csrC Escherichia coli K12 MG1655 degradation
LuxO-P qrr Vibrio cholerae induce
LuxO-P qrr Vibrio harveyi induce
VarS/VarA csrC Vibrio cholerae induce
VarS/VarA csrD Vibrio cholerae induce
BarA/SirA csrC Salmonella enterica induce
VarS/VarA csrB Vibrio cholerae induce
BarA/SirA csrB Salmonella enterica induce
RcsB/RcsC rprA Escherichia coli repress
RcsC rprA Escherichia coli induce
fur isrE Salmonella typhimurium induce
fur ryhB Salmonella typhimurium induce
STM1263 isrD Salmonella typhimurium repress
oxyR oxyS Salmonella typhimurium induce
GcvR gcvB Escherichia coli repress
GcvA gcvB Escherichia coli induce
LeuO dsrA Escherichia coli repress
StpA/H-NS dsrA Escherichia coli repress
LeuO dsrA Escherichia coli repress
GacS rsmZ Pseudomonas aeruginosa induce
LadS rsmZ Pseudomonas aeruginosa induce
RetS rsmZ Pseudomonas aeruginosa repress
gacA rsmY Pseudomonas aeruginosa repress
rsmA rsmY Pseudomonas aeruginosa repress
sigma E micA Escherichia coli induce
sigma E rybB Escherichia coli induce
EnvZ-OmpR micc Escherichia coli repress
OmpR micF Escherichia coli induce
OmpR omrA Escherichia coli induce
OmpR omrB Escherichia coli induce
rob micF Escherichia coli induce
soxRS micF Escherichia coli induce
marA micF Escherichia coli induce
hns micF Escherichia coli repress
lrp micF Escherichia coli repress
RSBF micF Escherichia coli induce
HRBF micF Escherichia coli induce
Fur ryhB Escherichia coli repress

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sRNA Gene|sRNA Regulation|sRNA Targeting

Literatrues Records of sRNA Targeting

Select sRNA targets and submit to browse sRNA you interest.

sRNA_Name Target_Name Target_Type Species Regulation Hfq need
dicf ftsZ mRNA Escherichia coli K12 repress no
sgrS ptsG mRNA Escherichia coli K12 repress yes
sgrS rpoS mRNA Escherichia coli K12 repress no
tpke11     Escherichia coli K12 unclear yes
rybB     Escherichia coli K12 unclear yes
dicF     Escherichia coli K12 unclear yes
ryeB     Escherichia coli K12 unclear yes
dsrA     Escherichia coli K12 unclear yes
ryeE     Escherichia coli K12 unclear yes
sraD     Escherichia coli K12 unclear yes
gcvB     Escherichia coli K12 unclear yes
rygA     Escherichia coli K12 unclear yes
rygB     Escherichia coli K12 unclear yes
ryhA     Escherichia coli K12 unclear yes
ryhB     Escherichia coli K12 unclear yes
glmZ     Escherichia coli K12 unclear yes
spf     Escherichia coli K12 unclear yes
oxyS     Escherichia coli K12 unclear yes
micF     Escherichia coli K12 unclear yes
csrB     Escherichia coli K12 unclear yes
IS183     Escherichia coli K12 unclear yes
sgrS     Escherichia coli K12 unclear yes
rybC     Escherichia coli K12 unclear yes
rybD     Escherichia coli K12 unclear yes
rydC     Escherichia coli K12 unclear yes
ryeF     Escherichia coli K12 unclear yes
ryjB     Escherichia coli K12 unclear yes
csrB CsrA protein Escherichia coli K12 repress  
rsmZ rsmA protein P. fluorescens CHA0 repress  
dicF ftsZ mRNA E.coli JS219/pJPB57 repress  
aepH rsmA protein E. carotovora repress  
csrB csrA protein Escherichia coli K12 repress  
dsrA rcsA mRNA Escherichia coli K12 repress  
csrB CsrA protein Escherichia coli K12 repress  
rsmB rsmA protein E. carotovora repress  
rsmX RsmE protein Pseudomonas fluorescens repress  
rsmY RsmE protein Pseudomonas fluorescens repress  
rsmZ RsmE protein Pseudomonas fluorescens repress  
rsmX RsmA protein Pseudomonas fluorescens repress  
rsmY RsmA protein Pseudomonas fluorescens repress  
rsmZ RsmA protein Pseudomonas fluorescens repress  
rsmY RsmA protein Pseudomonas aeruginosa repress  
rsmZ RsmA protein Pseudomonas aeruginosa repress  
csrB CsrA protein Salmonella enterica repress  
csrC CsrA protein Salmonella enterica repress  
csrB CsrA protein Vibrio cholerae repress  
csrC CsrA protein Vibrio cholerae repress  
csrD CsrA protein Vibrio cholerae repress  
qrr hapR mRNA Vibrio cholerae repress yes
qrr luxR mRNA Vibrio harveyi repress yes
csrD CsrA protein Vibrio cholerae repress no
csrC CsrA protein Vibrio cholerae repress no
csrB CsrA protein Vibrio cholerae repress no
csrB CsrA protein Salmonella enterica repress no
csrC CsrA protein Salmonella enterica repress no
dsrA H-NS protein Escherichia coli K12 repress no
dsrA hns mRNA Escherichia coli repress no
dsrA rpoS mRNA Escherichia coli induce no
ryhB sodB mRNA Escherichia coli repress  
istR-1 tisAB mRNA Escherichia coli repress  
micC ompC mRNA Escherichia coli unclear  
micF ompF mRNA Escherichia coli unclear  
micA ompA mRNA Escherichia coli unclear  
sgrS ptsG mRNA Escherichia coli unclear  
oxyS fhlA mRNA Escherichia coli repress  
oxyS rpoS mRNA Escherichia coli repress y
dsrA rpoS mRNA Escherichia coli induce y
rprA rpoS mRNA Escherichia coli induce y
ryhB sodB mRNA Escherichia coli repress y
dsrA hns mRNA Escherichia coli repress y
micA ompA mRNA Escherichia coli repress y
micF ompF mRNA Escherichia coli repress y
spot42 galK mRNA Escherichia coli repress y
sgrS ptsG mRNA Escherichia coli repress y
gcvB dppA mRNA Escherichia coli repress y
IhtA hctA mRNA Chlamydia trachomatis repress  
ryhB sodB mRNA Vibrio cholerae repress  
isrC msgA mRNA Salmonella typhimurium repress  
isrN STM2765 mRNA Salmonella typhimurium induce  
gadY gadX mRNA Escherichia coli induce y
dsrA rpoS mRNA Escherichia coli induce  
dsrA hns mRNA Escherichia coli repress  
dsrA rpoS mRNA Escherichia coli induce  
dsrA hns mRNA Escherichia coli repress y
dsrA rpoS mRNA Escherichia coli induce y
micA ompA mRNA Escherichia coli unclear y
micF ompF mRNA Escherichia coli unclear  
micC ompC mRNA Escherichia coli unclear  
RybB ompC mRNA Escherichia coli unclear y
RybB ompW mRNA Escherichia coli unclear y
RseX ompA mRNA Escherichia coli unclear  
RseX ompC mRNA Escherichia coli unclear  
InvR ompD mRNA Salmonella typhimurium unclear  
gcvB dppA mRNA Escherichia coli repress  
gcvB oppA mRNA Escherichia coli repress  
gcvB livJ mRNA Escherichia coli repress  
gcvB gltI mRNA Escherichia coli repress  
gcvB dppA mRNA Escherichia coli repress  
dsrA ilvIH mRNA Escherichia coli repress  
gcvB oppA mRNA Escherichia coli repress  
dsrA argR mRNA Escherichia coli repress  
dsrA rbsD mRNA Escherichia coli induce  
rprA rpoS mRNA Escherichia coli repress y
micF ompF mRNA Serratia marcescens repress  
dicF ftsZ mRNA Escherichia coli repress  
micF ompF mRNA Escherichia coli repress  
micX vc0620 mRNA Vibrio cholerae repress y
micX vc0972 mRNA Vibrio cholerae repress y
omrA btuB mRNA Escherichia coli repress y
omrB fecA mRNA Escherichia coli repress y
omrB folP mRNA Escherichia coli repress y
omrB glmM mRNA Escherichia coli repress y
omrA fepA mRNA Escherichia coli repress y
omrA fecA mRNA Escherichia coli repress y
omrA folP mRNA Escherichia coli repress y
omrA glmM mRNA Escherichia coli repress y
omrB cirA mRNA Escherichia coli repress y
omrB ompT mRNA Escherichia coli repress y
omrA cirA mRNA Escherichia coli repress y
omrA ompT mRNA Escherichia coli repress y
ryhB sdhCDAB mRNA Escherichia coli repress y
ryhB sodB mRNA Escherichia coli repress y
ryhB acnA mRNA Escherichia coli repress y
ryhB fumA mRNA Escherichia coli repress y

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Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw