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Computational sRNAs||Computational sRNAs/Targets


Computational sRNAs browser

Select and submit to browse computational sRNAs.

Gene_Name Start End Strand Note Species
IS001 20666 20798 forward "Flanking_genes:nhaR+,rpsT-" Escherichia coli K12 MG1655
IS003 167267 167427 reverse "Flanking_genes:mrcB+,fhuA" Escherichia coli K12 MG1655
IS004 191706 191797 reverse "Flanking_genes:tsf+,pyrH+" Escherichia coli K12 MG1655
IS005 225589 225706 reverse GenBank_annotation:alaV (alanine tRNA IB) in nnH operon Escherichia coli K12 MG1655
IS006 236906 237081 forward GenBank_annotation:aspV (asparate tRNA 1) Escherichia coli K12 MG1655
IS007 284398 284523 reverse "Flanking_genes:yagF+,yagG+" Escherichia coli K12 MG1655
IS008 289594 289856 forward "Flanking_genes:argF-,yagJ+" Escherichia coli K12 MG1655
IS009 302835 303034 reverse "Flanking_genes:yagU+,ykgJ-" Escherichia coli K12 MG1655
IS011 450965 451296 forward "Flanking_genes:cyoA-,ampG+" Escherichia coli K12 MG1655
IS012 454059 454263 reverse "Flanking_genes:bolA+,tig+" Escherichia coli K12 MG1655
IS014 480028 480388 forward "Flanking_genes:ybaJ-,acrB-" Escherichia coli K12 MG1655
IS016 567886 568040 reverse "Flanking_genes:ermE+,ybcK+" Escherichia coli K12 MG1655
IS017 569905 570047 reverse "Flanking_genes:ybcK+,ybcC+" Escherichia coli K12 MG1655
IS018 573636 573747 forward "Flanking_genes:ybcQ+,nmpC-" Escherichia coli K12 MG1655
IS019 576356 576507 forward "Flanking_genes:nmpC-,essD+" Escherichia coli K12 MG1655
IS020 579526 579667 forward "Flanking_genes:ybcW+,nohB+" Escherichia coli K12 MG1655
IS021 583781 583900 forward "Flanking_genes:appY+,ompT-" Escherichia coli K12 MG1655
IS022 584964 585220 forward "Flanking_genes:ompT-,envY-" Escherichia coli K12 MG1655
IS023 623829 624038 reverse "Flanking_genes:fepB-,entC+" Escherichia coli K12 MG1655
IS024 637912 638025 forward "Flanking_genes:dsbG-,ahpC+" Escherichia coli K12 MG1655
IS026 698444 698601 reverse "Flanking_genes:asnB-,nagD-" Escherichia coli K12 MG1655
IS027 707168 707344 reverse "Flanking_genes:glnS+,ybfM+" Escherichia coli K12 MG1655
IS028 728577 728738 reverse "Flanking_genes:ybfA+,rhsC+" Escherichia coli K12 MG1655
IS029 752270 752396 forward "Flanking_genes:ybgD-,gltA-" Escherichia coli K12 MG1655
IS030 769959 770055 forward "Flanking_genes:ybgB+,cydA+" Escherichia coli K12 MG1655
IS031 779607 779718 reverse "Flanking_genes:ybgF+,lysT+" Escherichia coli K12 MG1655
IS032 779730 780110 forward "GenBank_annotation:RNA operon (lysT, valT, lysW)" Escherichia coli K12 MG1655
IS033 781029 781252 reverse "Flanking_genes:lysQ+,nasdA+" Escherichia coli K12 MG1655
IS035 812251 812372 forward "Flanking_genes:bioD+,uvrB+" Escherichia coli K12 MG1655
IS036 899863 899959 forward "Flanking_genes:artJ-,artM-" Escherichia coli K12 MG1655
IS037 899906 900056 forward "Flanking_genes:artJ-,grtM-" Escherichia coli K12 MG1655
IS038 915522 915655 forward "Flanking_genes:aqpZ-,ybjD+" Escherichia coli K12 MG1655
IS040 925049 925234 reverse GenBank_annotation:serW (serine tRNAS) Escherichia coli K12 MG1655
IS042 1014724 1014910 forward "Flanking_genes:ymbA+,rmf+" Escherichia coli K12 MG1655
IS043 1050440 1050555 reverse "Flanking_genes:cspH-,cspG+" Escherichia coli K12 MG1655
IS044 1096732 1096906 reverse GenBank_annotation:serX (serine tRNA5) Escherichia coli K12 MG1655
IS045 1102640 1103008 forward "Flanking_genes:csgD-,csgB+" Escherichia coli K12 MG1655
IS050 1195609 1195836 reverse "Flanking_genes:icd+,ymfD-" Escherichia coli K12 MG1655
IS052 1216232 1216376 reverse "Flanking_genes:ymgC+,ycgG+" Escherichia coli K12 MG1655
IS054 1223125 1223269 reverse "Flanking_genes:ymgD-,minE-" Escherichia coli K12 MG1655
IS055 1223195 1223288 reverse "Flanking_genes:ycgI+,minE-" Escherichia coli K12 MG1655
IS056 1236615 1236718 reverse "Flanking_genes:ycgB-,dadA+" Escherichia coli K12 MG1655
IS059 1342431 1342640 reverse "Flanking_genes:yciT-,yciR-" Escherichia coli K12 MG1655
IS060 1349187 1349375 forward "Flanking_genes:fabI-,ycjD-" Escherichia coli K12 MG1655
IS061 1403676 1403834 reverse "Flanking_genes:abgR+,ydaL-" Escherichia coli K12 MG1655
IS062 1432742 1433125 reverse "Flanking_genes:ynaE-,ynaF-" Escherichia coli K12 MG1655
IS063 1435142 1435259 forward "Flanking_genes:ompN-,ydbK-" Escherichia coli K12 MG1655
IS064 1449521 1449621 forward "Flanking_genes:tynA-,maoC-" Escherichia coli K12 MG1655
IS066 1463254 1463399 forward "Flanking_genes:paaY+,ydbA" Escherichia coli K12 MG1655
IS067 1489461 1489633 reverse "Flanking_genes:cybB+,ydcA+" Escherichia coli K12 MG1655
IS068 1489905 1490244 reverse "Flanking_genes:paaY+,ydbA+" Escherichia coli K12 MG1655
IS069 1550236 1550402 forward "Flanking_genes:fdnl+,yddM-" Escherichia coli K12 MG1655
IS070 1553777 1554007 reverse "Flanking_genes:sfcA-,yddX-" Escherichia coli K12 MG1655
IS071 1580770 1580915 forward "Flanking_genes:ydeN-,ydeO-" Escherichia coli K12 MG1655
IS072 1596191 1596326 forward "Flanking_genes:ydeK-,ydeV-" Escherichia coli K12 MG1655
IS073 1630377 1630602 forward "Flanking_genes:ydfJ-,ydfK+" Escherichia coli K12 MG1655
IS077 1644975 1645147 reverse "Flanking_genes:flxA+,ydfW-" Escherichia coli K12 MG1655
IS078 1669041 1669213 reverse "Flanking_genes:ynfM+,asr+" Escherichia coli K12 MG1655
IS079 1695141 1695301 forward "Flanking_genes:gusR-,hdhA-" Escherichia coli K12 MG1655
IS081 1739222 1739379 forward "Flanking_genes:ydhC+,cfa+" Escherichia coli K12 MG1655
IS082 1762690 1762847 reverse GenBank_annotation:rydB or tpe7 Escherichia coli K12 MG1655
IS083 1768287 1768506 forward GenBank_annotation:rprA sRNAgene Escherichia coli K12 MG1655
IS085 1804122 1804298 reverse "Flanking_genes:ydiY-,pfkB+" Escherichia coli K12 MG1655
IS087 1887856 1887966 forward "Flanking_genes:fadD-,yeaY-" Escherichia coli K12 MG1655
IS089 1903353 1903518 forward "Flanking_genes:yobD+,yebN+" Escherichia coli K12 MG1655
IS091 1921086 1921365 forward GenBank_annotation:ryeA and ryeBa or sraCb Escherichia coli K12 MG1655
IS092 1985862 1986027 reverse "Flanking_genes:yecJ-,yecR+" Escherichia coli K12 MG1655
IS093 1989743 1990069 forward GenBank_annotation:cysT (cysteine tRNA) Escherichia coli K12 MG1655
IS094 1994968 1995087 forward "Flanking_genes:sdiA-,yecC-" Escherichia coli K12 MG1655
IS095 2023239 2023336 reverse GenBank_annotation:dsrA sRNAgene Escherichia coli K12 MG1655
IS096 2031644 2031766 forward "Flanking_genes:yedR-,yedS+" Escherichia coli K12 MG1655
IS098 2041113 2041206 forward "Flanking_genes:yodB+,serV-" Escherichia coli K12 MG1655
IS099 2042556 2042775 forward GenBank_annotation:asnT (asparagine tRNA) Escherichia coli K12 MG1655
IS100 2055945 2056139 reverse GenBank_annotation:asnW (asparagine IRNA) Escherichia coli K12 MG1655
IS101 2060073 2060328 forward GenBank_annotation:asnV (asparagine tRNA) Escherichia coli K12 MG1655
IS102 2069337 2069540 forward "Flanking_genes:yeeP+,flu+" Escherichia coli K12 MG1655
IS105 2151195 2151378 forward "Flanking_genes:yegL-,yegM+" Escherichia coli K12 MG1655
IS107 2175335 2175430 reverse "Flanking_genes:gatY-,ftaB-" Escherichia coli K12 MG1655
IS108 2190381 2190515 forward "Flanking_genes:yehD-,yehE-" Escherichia coli K12 MG1655
IS109 2190859 2190978 reverse "Flanking_genes:yehE+,mrp-" Escherichia coli K12 MG1655
IS110 2267589 2267948 reverse "Flanking_genes:yeiU+,spr+" Escherichia coli K12 MG1655
IS111 2284220 2284354 forward GenBank_annotation:proL (prolinetRNA2) Escherichia coli K12 MG1655
IS112 2288224 2288371 reverse "Flanking_genes:yejO-,narP+" Escherichia coli K12 MG1655
IS113 2310947 2311201 forward GenBank_annotation:micF sRNA gene (6S micF) Escherichia coli K12 MG1655
IS114 2311236 2311393 reverse Flanking_genes:micF+.yojN+ Escherichia coli K12 MG1655
IS115 2403317 2403693 forward "Flanking_genes:nuoA-,lrhA-" Escherichia coli K12 MG1655
IS116 2411264 2411416 forward "Flanking_genes:yfbV-,ackA" Escherichia coli K12 MG1655
IS117 2460675 2460836 reverse "Flanking_genes:fadL+,yfdF+" Escherichia coli K12 MG1655
IS118 2468477 2468607 reverse "Flanking_genes:yfdI+," Escherichia coli K12 MG1655
IS119 2481544 2481657 reverse "Flanking_genes:emrK-,evgA+" Escherichia coli K12 MG1655
IS120 2491348 2491747 forward "Flanking_genes:yfdW-,yfdX-" Escherichia coli K12 MG1655
IS122 2496319 2496526 reverse "Flanking_genes:yfdZ-,ypdA" Escherichia coli K12 MG1655
IS123 2516019 2516280 reverse GenBank_annotation:alaX (alanine tRNA) Escherichia coli K12 MG1655
IS124 2518937 2519317 forward "GenBank_annotation:tRNA operon (valU, valX, valY and tysV)" Escherichia coli K12 MG1655
IS125 2561257 2561485 reverse "Flanking_genes:yffP+,yffQ+" Escherichia coli K12 MG1655
IS128 2651535 2651743 forward "Flanking_genes:sseA+,sseB-" Escherichia coli K12 MG1655
IS129 2651687 2652078 reverse "Flanking_genes:sseA+,sseB-" Escherichia coli K12 MG1655
IS130 2689279 2689628 forward "Flanking_genes:yfliK-,pttrL+" Escherichia coli K12 MG1655
IS133 2729285 2729623 forward "Flanking_genes:rrsG-,clpB-" Escherichia coli K12 MG1655
IS135 2759199 2759300 reverse "Flanking_genes:yfjJ+,yfjK-" Escherichia coli K12 MG1655
IS136 2765455 2765720 forward "Flanking_genes:yfiO+,yj6P+" Escherichia coli K12 MG1655
IS137 2781499 2781595 reverse "Flanking_genes:pinH-,ypjB-" Escherichia coli K12 MG1655
IS139 2796784 2796963 reverse "Flanking_genes:stpA-,ygaW+" Escherichia coli K12 MG1655
IS140 2816358 2816471 forward GenBank_annotation:argV (arginine tRNA2 in tRNA opreon) Escherichia coli K12 MG1655
IS141 2876310 2876479 reverse "Flanking_genes:iap+,ygbF-" Escherichia coli K12 MG1655
IS142 2885306 2885437 forward "Flanking_genes:ygcB-,cysH-" Escherichia coli K12 MG1655
IS143 2925871 2926018 forward "Flanking_genes:ygdH+,sdaC+" Escherichia coli K12 MG1655
IS144 2931888 2932014 reverse "Flanking_genes:fucA-,fucP+" Escherichia coli K12 MG1655
IS145 2940715 2940928 forward GenBank_annotation:gcvB sRNA gene Escherichia coli K12 MG1655
IS146 2945399 2945741 forward "GenBank_annotation:6methioninetRNA operon (metZ, metW, metV)" Escherichia coli K12 MG1655
IS147 2982223 2982417 forward "Flanking_genes:kduI+,yqeF+" Escherichia coli K12 MG1655
IS149 3048693 3048953 reverse "Flanking_genes:gcvT-,visC-" Escherichia coli K12 MG1655
IS150 3054867 3055018 forward "Flanking_genes:ygfA+,serA-" Escherichia coli K12 MG1655
IS151 3108376 3108509 forward GenBank_annotation:pheV (phenylalanine Trna) Escherichia coli K12 MG1655
IS152 3119392 3119548 forward "Flanking_genes:yghK-,glcB-" Escherichia coli K12 MG1655
IS153 3161571 3161703 forward "Flanking_genes:plsC-,parC-" Escherichia coli K12 MG1655
IS154 3181333 3181587 reverse "Flanking_genes:ygiE+,ribB-" Escherichia coli K12 MG1655
IS156 3192729 3192884 reverse GenBank_annotation:tp8c Escherichia coli K12 MG1655
IS158 3213232 3213360 forward GenBank_annotation:ileX (isoleucine tRNA2) Escherichia coli K12 MG1655
IS160 3236011 3236135 forward GenBank_annotation:sraF Escherichia coli K12 MG1655
IS162 3265304 3265429 forward "Flanking_genes:tdcR+,yhaB+" Escherichia coli K12 MG1655
IS163 3267562 3267742 forward "Flanking_genes:yhaC+,rnpB-" Escherichia coli K12 MG1655
IS164 3267675 3267855 forward "Flanking_genes:yhaC+,rnpB-" Escherichia coli K12 MG1655
IS165 3315693 3316022 reverse GenBank_annotation:tnetY (methionine tRNA-f2) Escherichia coli K12 MG1655
IS166 3358366 3358576 reverse "Flanking_genes:gltD+,gltF" Escherichia coli K12 MG1655
IS167 3407629 3407776 reverse "Flanking_genes:prmA+,yhdG-" Escherichia coli K12 MG1655
IS168 3411240 3411490 forward "Flanking_genes:envR-,acrE+" Escherichia coli K12 MG1655
IS170 3467677 3467765 forward "Flanking_genes:yheB-,tufA-" Escherichia coli K12 MG1655
IS173 3516932 3517022 reverse "Flanking_genes:aroK-,hafQ-" Escherichia coli K12 MG1655
IS174 3537428 3537623 reverse "Flanking_genes:yhgF+,fepA+" Escherichia coli K12 MG1655
IS175 3571214 3571405 forward "Flanking_genes:glgB+,asd-" Escherichia coli K12 MG1655
IS176 3578549 3578650 reverse GenBank_annotation:ryhB or sraI Escherichia coli K12 MG1655
IS177 3582038 3582229 reverse Flanking_genes:yrhD+.yrhB+ Escherichia coli K12 MG1655
IS178 3590059 3590308 forward "Flanking_genes:ugpB-,livF-" Escherichia coli K12 MG1655
IS179 3595386 3595485 reverse "Flanking_genes:livK-,yhhK+" Escherichia coli K12 MG1655
IS180 3596063 3596191 forward "Flanking_genes:yhhK+,livJ-" Escherichia coli K12 MG1655
IS181 3633531 3633749 reverse "Flanking_genes:ykiN-,pitA+" Escherichia coli K12 MG1655
IS182 3655606 3655816 reverse "Flanking_genes:hdeD+,yhiE+" Escherichia coli K12 MG1655
IS183 3662491 3662604 forward "Flanking_genes:yhiW-,yhiX-" Escherichia coli K12 MG1655
IS184 3663678 3663803 forward "Flanking_genes:yhiX,gadA-" Escherichia coli K12 MG1655
IS185 3706203 3706330 reverse GenBank_annotation:proK (proline tRNA) Escherichia coli K12 MG1655
IS186 3719854 3719951 forward "Flanking_genes:yiaZ-,glyS-" Escherichia coli K12 MG1655
IS187 3752243 3752493 forward "Flanking_genes:yiaW-,aldB-" Escherichia coli K12 MG1655
IS188 3787768 3787950 forward "Flanking_genes:yibD-,tdh-" Escherichia coli K12 MG1655
IS189 3790319 3790421 forward "Flanking_genes:kbl-,htrL-" Escherichia coli K12 MG1655
IS190 3904212 3904329 reverse GenBank_annotation:bgl operon mRNA leader Escherichia coli K12 MG1655
IS191 3912925 3913171 forward Flanking_genes:glmU-.aptC- Escherichia coli K12 MG1655
IS193 3988483 3988583 forward "Flanking_genes:hemC-,cyaA" Escherichia coli K12 MG1655
IS194 3998801 3998946 forward "Flanking_genes:yigE-,corA" Escherichia coli K12 MG1655
IS195 4034715 4034997 forward GenBank_annotation:ileT and alaT in rmA operon Escherichia coli K12 MG1655
IS196 4044340 4044455 reverse "Flanking_genes:yihG-,polA+" Escherichia coli K12 MG1655
IS197 4047475 4047593 forward GenBank_annotation:spf sRNA gene (Spot42 sRNA) Escherichia coli K12 MG1655
IS200 4076525 4076636 reverse "Flanking_genes:yiiD+,yiiE+" Escherichia coli K12 MG1655
IS201 4106137 4106321 reverse "Flanking_genes:pfkA+,sbp+" Escherichia coli K12 MG1655
IS204 4174729 4174842 reverse "Flanking_genes:tufB+,secE+" Escherichia coli K12 MG1655
IS205 4174754 4174918 forward "Flanking_genes:tufB+,secE+" Escherichia coli K12 MG1655
IS206 4187977 4188079 forward "Flanking_genes:htrC+,thiH-" Escherichia coli K12 MG1655
IS207 4233138 4233291 reverse "Flanking_genes:pgi+,yjbE+" Escherichia coli K12 MG1655
IS208 4258914 4259193 reverse "Flanking_genes:yjbM+,yjbN+" Escherichia coli K12 MG1655
IS209 4258973 4259131 forward "Flanking_genes:yjbM+,yjbN+" Escherichia coli K12 MG1655
IS211 4304230 4304455 forward "Flanking_genes:yjcS-,yjcT-" Escherichia coli K12 MG1655
IS212 4359749 4360129 forward "Flanking_genes:cadC-,pheU+" Escherichia coli K12 MG1655
IS213 4360084 4360211 reverse GenBank_annotation:pheU (phenylalanine tRNA) Escherichia coli K12 MG1655
IS214 4371910 4372189 forward "Flanking_genes:yjeJ-,yjeK-" Escherichia coli K12 MG1655
IS215 4425099 4425233 forward "Flanking_genes:yjfZ-,ytfA+" Escherichia coli K12 MG1655
IS217 4485969 4486075 reverse "Flanking_genes:yjgQ+,yjgR-" Escherichia coli K12 MG1655
IS218 4493947 4494100 forward GenBank_annotation:leuX (leucine tRNA) Escherichia coli K12 MG1655
IS219 4501193 4501457 forward "Flanking_genes:yjgZ+,yjhB+" Escherichia coli K12 MG1655
IS220 4531472 4531746 forward "Flanking_genes:yjhQ-,yjhR-" Escherichia coli K12 MG1655
IS221 4532323 4532459 reverse "Flanking_genes:yjhQ-,yjhR+" Escherichia coli K12 MG1655
IS222 4539345 4539532 forward "Flanking_genes:fimB+,fimE+" Escherichia coli K12 MG1655
IS223 4554070 4554182 forward "Flanking_genes:yjiC-,yjiD+" Escherichia coli K12 MG1655
IS224 4566199 4566339 reverse "Flanking_genes:yjiO-,yjiP+" Escherichia coli K12 MG1655
IS225 4569550 4569682 forward "Flanking_genes:yjiS+,yjiT+" Escherichia coli K12 MG1655
IS227 4611908 4612011 forward "Flanking_genes:yjjV+,yjjW-" Escherichia coli K12 MG1655
NC001 8471 8575 reverse Sense genes:talB+ (M) Escherichia coli K12 MG1655
NC002 145382 145470 reverse Sense genes:yadE+ (M) Escherichia coli K12 MG1655
NC003 191751 191935 reverse Sense genes:pyrH+ (N) Escherichia coli K12 MG1655
NC004 227062 227343 reverse Adjacent genes:yaeD+/yafB+ Escherichia coli K12 MG1655
NC005 228966 229048-229058 forward GenBank annotations:aspU Escherichia coli K12 MG1655
NC006 233493 233843 forward Sense genes:dniR- (M) Escherichia coli K12 MG1655
NC007 236915 237080 forward GenBank annotations:aspV Escherichia coli K12 MG1655
NC008 293013-293138 293508 forward Sense genes:yagL- (N) yagM- (C) Escherichia coli K12 MG1655
NC009 316420-316554 316626 forward Adjacent genes:ykgA-/ykgB- Escherichia coli K12 MG1655
NC010 330773 330958 reverse Adjacent genes:betT+/yahA+ Escherichia coli K12 MG1655
NC011 431272 431448 forward Adjacent genes:tsx-/yajI- Escherichia coli K12 MG1655
NC012 460539 460641 reverse Adjacent genes:lon+/hupB+ Escherichia coli K12 MG1655
NC013 557197-557214 557328 forward Adjacent genes:folD-/sfmA+ Escherichia coli K12 MG1655
NC014 569952 570038-570045 reverse Adjacent genes:ybcK+/ybcL+ Escherichia coli K12 MG1655
NC015 584926-585013 585219 forward Adjacent genes:ompT-/envY- Escherichia coli K12 MG1655
NC016 752115-752189 752395 forward Adjacent genes:ybgD-/gltA- Escherichia coli K12 MG1655
NC017 757821 758150 reverse Sense genes:b0725+ (C) sucA+ (N) Escherichia coli K12 MG1655
NC018 776452-776456 776537 reverse Sense genes:tolA+ (M) Escherichia coli K12 MG1655
NC019 779739 780109 forward "GenBank annotations:lysT, valT, lysW" Escherichia coli K12 MG1655
NC020 780911-781067 781243 reverse Adjacent genes:ybgF+/nadA+ Escherichia coli K12 MG1655
NC021 854993 855137 forward Adjacent genes:ybiS-/ybiT+ Escherichia coli K12 MG1655
NC022 899841 899956-900055 forward Adjacent genes:artJ-/artM- Escherichia coli K12 MG1655
NC023 925104-925114 925225-925337 reverse GenBank annotations:serW Escherichia coli K12 MG1655
NC024 953999-954005 954097-954104 forward Sense genes:ycaO- (C) Escherichia coli K12 MG1655
NC025 1096423-1096795 1096897-1096937 reverse GenBank annotations:serX Escherichia coli K12 MG1655
NC026 1169665 1169745 forward Sense genes:mfd- (C) Escherichia coli K12 MG1655
NC027 1195651 1195827-1196071 reverse Adjacent genes:icdA+/ymfD- Escherichia coli K12 MG1655
NC028 1197016-1197275 1197437 forward Sense genes:ymfE- (M) Escherichia coli K12 MG1655
NC029 1198645 1198751 reverse Sense genes:lit+ (M) Escherichia coli K12 MG1655
NC030 1210552 1210856-1210864 forward Adjacent genes:mcrA+/ycgW- Escherichia coli K12 MG1655
NC031 1213898 1214112 forward Sense genes:b1163- (M) Escherichia coli K12 MG1655
NC032 1216280 1216367-1216383 reverse Adjacent genes:ymgC+/b1168+ Escherichia coli K12 MG1655
NC033 1219712 1219823-1220056 reverse Sense genes:b1169+ (M) Escherichia coli K12 MG1655
NC034 1225360 1225440 reverse Adjacent genes:minC-/ycgJ+ Escherichia coli K12 MG1655
NC035 1255698 1255895 forward Adjacent genes:b1202-/ychF- Escherichia coli K12 MG1655
NC036 1432950 1433214 forward Sense genes:ynaF- (C) Escherichia coli K12 MG1655
NC037 1449530 1449620 forward Adjacent genes:tynA-/maoC- Escherichia coli K12 MG1655
NC038 1463146 1463221-1463398 forward Adjacent genes:b1400+/yi222- Escherichia coli K12 MG1655
NC039 1463154 1463301-1463317 reverse Adjacent genes:b1400+/yi222- Escherichia coli K12 MG1655
NC040 1463146-1463296 1463398 forward Adjacent genes:b1400+/yi222- Escherichia coli K12 MG1655
NC041 1489517 1489624 reverse Adjacent genes:cybB+/ydcA+ Escherichia coli K12 MG1655
NC042 1504268 1504343 reverse Sense genes:ydcN+ (M) Escherichia coli K12 MG1655
NC043 1550245 1550428 forward GenBank annotations:C0362 Escherichia coli K12 MG1655
NC044 1565327-1565393 1565515 forward Adjacent genes:b1490-/b1491- Escherichia coli K12 MG1655
NC045 1588443 1588652 forward Sense genes:b1506- (N) Escherichia coli K12 MG1655
NC046 1596200 1596325 forward Adjacent genes:ydeK-/ydeV- Escherichia coli K12 MG1655
NC047 1634837 1635085-1635206 reverse Sense genes:ydfO+ (N) Escherichia coli K12 MG1655
NC048 1636282-1636293 1636395 reverse Adjacent genes:b1551-/cspI- Escherichia coli K12 MG1655
NC049 1645927 1646313 reverse Sense genes:dicA+ (N) Escherichia coli K12 MG1655
NC050 1669100 1669214 reverse Adjacent genes:ynfM+/asr+ Escherichia coli K12 MG1655
NC051 1739231-1739268 1739378 forward Adjacent genes:ydhC+/cfa+ Escherichia coli K12 MG1655
NC052 1762744 1762848 reverse GenBank annotations:rydB/tpe7/IS082 Escherichia coli K12 MG1655
NC053 1804162 1804289 reverse Adjacent genes:b1722-/pfkB+ Escherichia coli K12 MG1655
NC054 1865821 1866092 reverse Sense genes:yeaG+ (M) Escherichia coli K12 MG1655
NC055 1896373 1896538 reverse Sense genes:b1815+ (N) Escherichia coli K12 MG1655
NC056 1903333-1903411 1903517 forward Adjacent genes:b1820+/b1821+ Escherichia coli K12 MG1655
NC057 1944079 1944183-1944219 reverse Sense genes:yebB+ (N) Escherichia coli K12 MG1655
NC058 1994949-1994956 1995086 forward Sense genes:yecC- (C) Escherichia coli K12 MG1655
NC059 2040100 2040182 forward Adjacent genes:b1973+/b1974+ Escherichia coli K12 MG1655
NC060 2042565 2042774 forward GenBank annotations:asnT Escherichia coli K12 MG1655
NC061 2055997 2056130 reverse GenBank annotations:asnW Escherichia coli K12 MG1655
NC062 2057869 2057991 forward GenBank annotations:asnU Escherichia coli K12 MG1655
NC063 2060082-2060276 2060398-2060405 forward GenBank annotations:asnV Escherichia coli K12 MG1655
NC064 2083596 2083717 forward Adjacent genes:yeeE-/yeeF- Escherichia coli K12 MG1655
NC065 2151204 2151377 forward Adjacent genes:b2073-/b2074+ Escherichia coli K12 MG1655
NC066 2166152-2166429 2166509 forward Adjacent genes:b2085-/b2086+ Escherichia coli K12 MG1655
NC067 2209374-2209375 2209572 reverse Sense genes:yehR+ (M) Escherichia coli K12 MG1655
NC068 2284229 2284353 forward GenBank annotations:proL Escherichia coli K12 MG1655
NC069 2460719 2460827-2461092 reverse Adjacent genes:fadL+/b2345+ Escherichia coli K12 MG1655
NC070 2464731 2464921 reverse Sense genes:intC+ (M) Escherichia coli K12 MG1655
NC071 2465791 2466224 reverse Sense genes:b2350+ (N) Escherichia coli K12 MG1655
NC072 2468523-2468526 2468598 reverse Adjacent genes:b2352+/b2353+ Escherichia coli K12 MG1655
NC073 2481604 2481743-2481798 reverse Adjacent genes:emrK-/evgA+ Escherichia coli K12 MG1655
NC074 2483994 2484232-2484410 reverse Sense genes:evgS+ (M) Escherichia coli K12 MG1655
NC075 2487019 2487246 forward Sense genes:yfdE- (N) Escherichia coli K12 MG1655
NC076 2491623-2491661 2491746 forward Adjacent genes:b2374-/b2375- Escherichia coli K12 MG1655
NC077 2516049-2516062 2516271 reverse "GenBank annotations:alaX, alaW" Escherichia coli K12 MG1655
NC078 2518865-2518946 2519316-2519385 forward "GenBank annotations:valU, valX, valY, lysV" Escherichia coli K12 MG1655
NC079 2588772-2588779 2589005-2589064 reverse Adjacent genes:acrD+/yffB+ Escherichia coli K12 MG1655
NC080 2648981 2649059 forward Sense genes:b2520- (M) Escherichia coli K12 MG1655
NC081 2677127 2677477 forward Sense genes:yphF- (N) Escherichia coli K12 MG1655
NC082 2689214 2689355 reverse GenBank annotations:tke1/sroF Escherichia coli K12 MG1655
NC083 2697660-2698056 2698138 forward Adjacent genes:yfhL+/acpS- Escherichia coli K12 MG1655
NC084 2753612 2754061 forward GenBank annotations:ssrA Escherichia coli K12 MG1655
NC085 2759270 2759665 forward Sense genes:yfjK- (C) Escherichia coli K12 MG1655
NC086 2765252 2765409 reverse Sense genes:yfjO+ (C) Escherichia coli K12 MG1655
NC087 2796832 2796960 reverse Adjacent genes:stpA-/b2670+ Escherichia coli K12 MG1655
NC088 2808664 2808743 reverse Sense genes:ygaH+ (C) Escherichia coli K12 MG1655
NC089 2945350-2945408 2945740 forward "GenBank annotations:metZ, metW, metV" Escherichia coli K12 MG1655
NC090 2991938 2992101-2992111 reverse Sense genes:b2854+ (N) Escherichia coli K12 MG1655
NC091 3022243 3022327 reverse Sense genes:ygfO+ (N) Escherichia coli K12 MG1655
NC092 3069309 3069486 forward Sense genes:pgk- (C) Escherichia coli K12 MG1655
NC093 3098850 3098919 forward Adjacent genes:ansB-/yggN- Escherichia coli K12 MG1655
NC094 3108325-3108385 3108501-3108591 forward GenBank annotations:pheV Escherichia coli K12 MG1655
NC095 3213241 3213359 forward GenBank annotations:ileX Escherichia coli K12 MG1655
NC096 3315695-3315746 3315933-3316010 reverse GenBank annotations:metY Escherichia coli K12 MG1655
NC097 3358426 3358513-3358567 reverse Adjacent genes:gltD+/gltF+ Escherichia coli K12 MG1655
NC098 3407693 3407767-3408031 reverse Adjacent genes:prmA+/yhdG+ Escherichia coli K12 MG1655
NC099 3420887-3421065 3421330 reverse "GenBank annotations:thrV, rrfF, rrfD" Escherichia coli K12 MG1655
NC100 3432775 3432935 reverse Sense genes:fmt+ (C) sun+ (N) Escherichia coli K12 MG1655
NC101 3467665-3467686 3467764 forward Adjacent genes:yheB-/tufA- Escherichia coli K12 MG1655
NC102 3655593 3655672-3655904 reverse Adjacent genes:hdeD+/yhiE+ Escherichia coli K12 MG1655
NC103 3655593-3655654 3655725-3655904 reverse Adjacent genes:hdeD+/yhiE+ Escherichia coli K12 MG1655
NC104 3656170 3656242-3656368 reverse Sense genes:yhiE+ (M) Escherichia coli K12 MG1655
NC105 3663407 3663802 forward Sense genes:yhiX- (N) Escherichia coli K12 MG1655
NC106 3672054 3672228 reverse Adjacent genes:yhjD+/yhjE+ Escherichia coli K12 MG1655
NC107 3706245 3706321 reverse GenBank annotations:proK Escherichia coli K12 MG1655
NC108 3719671 3719812-3719834 reverse Sense genes:t150+ (C) Escherichia coli K12 MG1655
NC109 3734659-3734695 3735077 forward Sense genes:bax- (N) Escherichia coli K12 MG1655
NC110 3765221 3765463-3765491 reverse Sense genes:yibJ+ (M) Escherichia coli K12 MG1655
NC111 3766712 3766784-3766866 reverse Adjacent genes:yibG+/b4549+ Escherichia coli K12 MG1655
NC112 3798670-3798700 3798769 forward Sense genes:rfaJ- (M) Escherichia coli K12 MG1655
NC113 3802677-3802746 3803001 forward Sense genes:rfaS- (M)rfaP- (C) Escherichia coli K12 MG1655
NC114 3942630 3942911 reverse Adjacent genes:yiePs-/yifDA- Escherichia coli K12 MG1655
NC115 3979979 3980460 forward "GenBank annotations:argX, hisR, leuT, proM" Escherichia coli K12 MG1655
NC116 3979984 3980295 reverse Adjacent genes:yifK+/aslB+ Escherichia coli K12 MG1655
NC117 3983895-3983935 3984256 forward GenBank annotations:sraJ/ryiA/k19 Escherichia coli K12 MG1655
NC118 4000752 4000888 forward Sense genes:yigG- (N) Escherichia coli K12 MG1655
NC119 4036401 4036682 reverse Adjacent genes:hemG+/mobB- Escherichia coli K12 MG1655
NC120 4038191 4038264-4038274 forward GenBank annotations:rrfA Escherichia coli K12 MG1655
NC121 4165949 4166028-4166158 reverse Adjacent genes:murI+/murB+ Escherichia coli K12 MG1655
NC122 4167523 4167804 reverse Adjacent genes:murI+/murB+ Escherichia coli K12 MG1655
NC123 4169310 4169383-4169393 forward GenBank annotations:rrfB Escherichia coli K12 MG1655
NC124 4208925 4209206 reverse Adjacent genes:purH-/yjaA+ Escherichia coli K12 MG1655
NC125 4210713 4210784 forward GenBank annotations:rrfE Escherichia coli K12 MG1655
NC126 4258959 4259184 reverse Adjacent genes:yjbM+/yjbN+ Escherichia coli K12 MG1655
NC127 4258840-4259054 4259130 forward Adjacent genes:yjbM+/yjbN+ Escherichia coli K12 MG1655
NC128 4360127 4360202 reverse GenBank annotations:pheU Escherichia coli K12 MG1655
NC129 4364372 4364454 forward Adjacent genes:dcuA-/b4139- Escherichia coli K12 MG1655
NC130 4407633 4407737-4407794 reverse Sense genes:yjfI+ (N) Escherichia coli K12 MG1655
NC131 4435129 4435243-4435325 reverse Adjacent genes:cysQ+/ytfI+ Escherichia coli K12 MG1655
NC132 4493956 4494099 forward GenBank annotations:leuX Escherichia coli K12 MG1655
NC133 4553924-4553945 4554181 forward Adjacent genes:b4325-/b4326+ Escherichia coli K12 MG1655

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Computational sRNAs||Computational sRNAs/Targets


Computational sRNAs/Targets browser

Select and submit to browse sRNAs/Targets.

sRNA_Name Target_Name Target_Type Predictiion_Methods Species
csrB CsrA protein a program CSRNA_FIND E.coli K12
csrB CsrA protein a program CSRNA_FIND Photorhabdus luminescens
csrB CsrA protein a program CSRNA_FIND Salmonella enterica Typhi
csrB CsrA protein a program CSRNA_FIND Salmonella typhimurium
csrB CsrA protein a program CSRNA_FIND Shigella flexneri 2a str. 301
csrB CsrA protein a program CSRNA_FIND Yersinia pestis CO92
csrB CsrA protein a program CSRNA_FIND Yersinia pseudotuberculosis
csrB1 CsrA protein a program CSRNA_FIND C.psychrerythraea
csrB1 CsrA protein a program CSRNA_FIND P.profundum
csrB1 CsrA protein a program CSRNA_FIND P.haloplanktis
csrB1 CsrA protein a program CSRNA_FIND S.oneidensis
csrB1 CsrA protein a program CSRNA_FIND V.cholerae
csrB1 CsrA protein a program CSRNA_FIND V.fischeri ES114
csrB1 CsrA protein a program CSRNA_FIND V.parahaemolyticus
csrB1 CsrA protein a program CSRNA_FIND V.vulnificus CMCP6
csrB1 CsrA protein a program CSRNA_FIND H.pylori J99
csrB2 CsrA protein a program CSRNA_FIND C.psychrerythraea
csrB2 CsrA protein a program CSRNA_FIND P.profundum
csrB2 CsrA protein a program CSRNA_FIND P.haloplanktis
csrB2 CsrA protein a program CSRNA_FIND S.oneidensis
csrB2 CsrA protein a program CSRNA_FIND V.cholerae
csrB2 CsrA protein a program CSRNA_FIND V.fischeri ES114
csrB2 CsrA protein a program CSRNA_FIND V.parahaemolyticus
csrB2 CsrA protein a program CSRNA_FIND V.vulnificus CMCP6
csrB2 CsrA protein a program CSRNA_FIND H.pylori J99
csrB3 CsrA protein a program CSRNA_FIND P.profundum
csrB3 CsrA protein a program CSRNA_FIND V.cholerae
csrB3 CsrA protein a program CSRNA_FIND V.parahaemolyticus
csrB3 CsrA protein a program CSRNA_FIND V.vulnificus CMCP6
csrB4 CsrA protein a program CSRNA_FIND P.profundum
csrC CsrA protein a program CSRNA_FIND E.coli K12
csrC CsrA protein a program CSRNA_FIND P.profundum
csrC CsrA protein a program CSRNA_FIND P.haloplanktis
csrC CsrA protein a program CSRNA_FIND Salmonella enterica Typhi
csrC CsrA protein a program CSRNA_FIND Salmonella typhimurium
csrC CsrA protein a program CSRNA_FIND Shigella flexneri 2a str. 301
csrC CsrA protein a program CSRNA_FIND V.parahaemolyticus
csrC CsrA protein a program CSRNA_FIND V.vulnificus CMCP6
csrC CsrA protein a program CSRNA_FIND Yersinia pestis CO92
csrC CsrA protein a program CSRNA_FIND Yersinia pseudotuberculosis
csrC CsrA protein a program CSRNA_FIND S.oneidensis
OmrA yrfC RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA lit RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA narH RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA deoR RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA yzgL RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA yadL RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA gmhB RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA nadA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA glcD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA cheZ RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA clpB RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA uup RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA yccS RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA cydD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA ydbC RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA hisM RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA malK RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA sufD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA folA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA yadD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA ybcS RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA mipA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA ygjN RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA yhbE RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA xylH RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA ssuC RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA csiE RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA yaeP RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA hokD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA fdoI RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA fecD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA hokB RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA ydhT RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA yeaZ RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA yfbT RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrA rumA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB yadL RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB yaiY RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB trxC RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB ypdD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB yphD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB gntP RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB fldA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB ybjE RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB srlB RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB ykfI RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB b2680 RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB mutM RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB yjhI RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB yaaH RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB ybhT RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB ykgJ RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB yeeE RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
OmrB yhdN RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
rsmB CsrA protein a program CSRNA_FIND E.carotovora SCRI1043
rsmB CsrA protein a program CSRNA_FIND Acinetobacter sp ADP1
rsmB/rsmZ CsrA protein a program CSRNA_FIND P.aeruginosa
rsmX CsrA protein a program CSRNA_FIND Acinetobacter sp. ADP1
rsmX CsrA protein a program CSRNA_FIND P.fluorescens Pf-5
rsmX CsrA protein a program CSRNA_FIND P.syringae
rsmX CsrA protein a program CSRNA_FIND P.putida KT2440
rsmX CsrA protein a program CSRNA_FIND P.arcticum
rsmY CsrA protein a program CSRNA_FIND Acinetobacter sp. ADP1
rsmY CsrA protein a program CSRNA_FIND L.pneumophila (P)
rsmY CsrA protein a program CSRNA_FIND P.aeruginosa
rsmY CsrA protein a program CSRNA_FIND P.fluorescens Pf-5
rsmY CsrA protein a program CSRNA_FIND P.putida
rsmY CsrA protein a program CSRNA_FIND P.syringae
rsmY CsrA protein a program CSRNA_FIND P.arcticum
rsmY CsrA protein a program CSRNA_FIND B.subtilis
rsmZ CsrA protein a program CSRNA_FIND Acinetobacter sp. ADP1
rsmZ CsrA protein a program CSRNA_FIND L.pneumophila (P)
rsmZ CsrA protein a program CSRNA_FIND P.fluorescens Pf-5
rsmZ CsrA protein a program CSRNA_FIND P.putida
rsmZ CsrA protein a program CSRNA_FIND P.syringae
rsmZ CsrA protein a program CSRNA_FIND P.arcticum
RyhB kdpA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB citG RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB frdA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB napF RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB yagJ RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB sugE RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB sdhD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB yhcF RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB sodA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB motA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB pinH RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB ygeZ RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB ykgE RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB ydaN RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB ynfF RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB yiaM RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB cysE RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB yciS RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB yegK RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB acpS RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB ygiQ RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB ybjG RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB yecD RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB metH RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB yadS RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB perM RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB metI RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB proA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB yagT RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB nagZ RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB sodB RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB ygiT RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655
RyhB dadA RNA a web serve tool : TargetRNA Escherichia coli K12 MG1655

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Department of Biological Science and Technology,

Institute of Bioinformatics National Chiao Tung University, Hsinchu, Taiwan

Contact with: bryan@mail.NCTU.edu.tw